Similar to PyMOL

Avogadro (software)

CP2K

Jmol

3D-Coat

ACDSee

Adobe Bridge

Amsterdam Density Functional

APBS (software)

AutoDock

Folding@home

List of Folding@home cores

MODELLER

Spartan (chemistry software)

Visual Molecular Dynamics

ISIS/Draw

Winmostar

OpenMM

ChemDraw

Gabedit

Open Babel

PSI (computational chemistry)

Template:Compu-stub